Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0320737.1b with 5 members (glucose-1-phosphate adenylyltransferase)

Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta / Euphyllophyta / Spermatophyta /

... /

Magnoliopsida / Mesangiospermae / Pentapetalae / asterids / lamiids /

Solanaceae /

Completeness score: 0.80

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

98.3%

This HOG has 1796 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0804954	Eukaryota	938		93.3%	2
HOG:E0802638	Eukaryota	881		96.8%	2
HOG:E0802071	Eukaryota	731		94.5%	2
HOG:E0802175	Eukaryota	727		78.8%	2
HOG:E0803410	Eukaryota	695		97.6%	2
HOG:E1031677	LUCA	233		42.9%	2
HOG:E0320429	Viridiplantae	178		95.5%	2
HOG:E0293864	Magnoliopsida	107		96.3%	2
HOG:E0847115	p__Chloroflexota	95		52.6%	2
HOG:E0267949	Pentapetalae	71		95.8%	2
HOG:E0316001	Embryophyta	65		100.0%	2
HOG:E0008888	p__Thermoproteota	63		52.4%	2
HOG:E0294566	Magnoliopsida	49		95.9%	2
HOG:E0008402	c__Thermoproteia	40		87.5%	2
HOG:E0843472	p__Acidobacteriota	35		54.3%	2
HOG:E0280141	Mesangiospermae	33		78.8%	2
HOG:E0831815	Eukaryota	22		95.5%	2
HOG:E0140049	Plasmodium	15		100.0%	2
HOG:E0121537	Oligohymenophorea	14		100.0%	2
HOG:E0214366	Poaceae	14		100.0%	2
HOG:E0092039	Stramenopiles	12		91.7%	2
HOG:E0066728	Metakinetoplastina	11		100.0%	2
HOG:E0309741	Euphyllophyta	10		60.0%	2
HOG:E0067757	Metakinetoplastina	8		87.5%	2
HOG:E0199814	Oryza	7		57.1%	2

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